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High host biodiversity is hypothesized to dilute the risk of vector‐borne diseases if many host species are ‘dead ends' that cannot effectively transmit the disease and low‐diversity areas tend to be dominated by competent host species. However, many studies on biodiversity–disease relationships characterize host biodiversity at single, local spatial scales, which complicates efforts to forecast disease risk if associations between host biodiversity and disease change with spatial scale. Here, our objective is to evaluate the spatial scaling of relationships between host biodiversity andBorrelia(the bacterial taxon which causes Lyme disease) infection prevalence in small mammals. We compared the associations between infection prevalence and small mammal host diversity for local communities (individual plots) and metacommunities (multiple plots aggregated within a landscape) sampled by the National Ecological Observatory Network (NEON), an emerging continental‐scale environmental monitoring program with a hierarchical sampling design. We applied a multispecies, spatially‐stratified capture–recapture model to a trapping dataset to estimate five small mammal biodiversity metrics, which we used to predict infection status for a subset of trapped individuals. We found that relationships betweenBorreliainfection prevalence and biodiversity did indeed vary when biodiversity was quantified at different spatial scales but that these scaling behaviors were idiosyncratic among the five biodiversity metrics. For example, species richness of local communities showed a negative (dilution) effect on infection prevalence, while species richness of the small mammal metacommunity showed a positive (amplification) effect on infection prevalence. Our modeling approach can inform future analyses as data from similar monitoring programs accumulate and become increasingly available through time. Our results indicate that a focus on single spatial scales when assessing the influence of biodiversity on disease risk provides an incomplete picture of the complexity of disease dynamics in ecosystems. 

Abstract Estimating spatiotemporal patterns of population density is a primary objective of wildlife monitoring programs. However, estimating density is challenging for species that are elusive and/or occur in habitats with limited visibility. In such situations, indirect measures (e.g., nests, dung) can serve as proxies for counts of individuals. Scientists have developed approaches to estimate population density using these “indirect count” data, although current methods do not adequately account for variation in sign production and spatial patterns of animal density. In this study, we describe a modified hierarchical distance sampling model that maximizes the information content of indirect count data using Bayesian inference. We apply our model to assess the status of chimpanzee and elephant populations using counts of nests and dung, respectively, which were collected along transects in 2007 and 2021 in western Uganda. Compared with conventional methods, our modeling framework produced more precise estimates of covariate effects on expected animal density by accounting for both long‐term and recent variations in animal abundance and enabled the estimation of the number of days that animal signs remained visible. We estimated a 0.98 probability that chimpanzee density in the region had declined by at least 10% and a 0.99 probability that elephant density had increased by 50% from 2007 to 2021. We recommend applying our modified hierarchical distance sampling model in the analysis of indirect count data to account for spatial variation in animal density, assess population change between survey periods, estimate the decay rate of animal signs, and obtain more precise density estimates than achievable with traditional methods. 

Abstract Biogeographic history can lead to variation in biodiversity across regions, but it remains unclear how the degree of biogeographic isolation among communities may lead to differences in biodiversity. Biogeographic analyses generally treat regions as discrete units, but species assemblages differ in how much biogeographic history they share, just as species differ in how much evolutionary history they share. Here, we use a continuous measure of biogeographic distance, phylobetadiversity, to analyze the influence of biogeographic isolation on the taxonomic and functional diversity of global mammal and bird assemblages. On average, biodiversity is better predicted by environment than by isolation, especially for birds. However, mammals in deeply isolated regions are strongly influenced by isolation; mammal assemblages in Australia and Madagascar, for example, are much less diverse than predicted by environment alone and contain unique combinations of functional traits compared to other regions. Neotropical bat assemblages are far more functionally diverse than Paleotropical assemblages, reflecting the different trajectories of bat communities that have developed in isolation over tens of millions of years. Our results elucidate how long-lasting biogeographic barriers can lead to divergent diversity patterns, against the backdrop of environmental determinism that predominantly structures diversity across most of the world. 

Numerous declines have been documented across insect groups, and the potential consequences of insect losses are dire. Butterflies are the most surveyed insect taxa, yet analyses have been limited in geographic scale or rely on data from a single monitoring program. Using records of 12.6 million individual butterflies from >76,000 surveys across 35 monitoring programs, we characterized overall and species-specific butterfly abundance trends across the contiguous United States. Between 2000 and 2020, total butterfly abundance fell by 22% across the 554 recorded species. Species-level declines were widespread, with 13 times as many species declining as increasing. The prevalence of declines throughout all regions in the United States highlights an urgent need to protect butterflies from further losses. 

Niche theory predicts that ecologically similar species can coexist through multidimensional niche partitioning. However, owing to the challenges of accounting for both abiotic and biotic processes in ecological niche modelling, the underlying mechanisms that facilitate coexistence of competing species are poorly understood. In this study, we evaluated potential mechanisms underlying the coexistence of ecologically similar bird species in a biodiversity-rich transboundary montane forest in east-central Africa by computing niche overlap indices along an environmental elevation gradient, diet, forest strata, activity patterns and within-habitat segregation across horizontal space. We found strong support for abiotic environmental habitat niche partitioning, with 55% of species pairs having separate elevation niches. For the remaining species pairs that exhibited similar elevation niches, we found that within-habitat segregation across horizontal space and to a lesser extent vertical forest strata provided the most likely mechanisms of species coexistence. Coexistence of ecologically similar species within a highly diverse montane forest was determined primarily by abiotic factors (e.g. environmental elevation gradient) that characterize the Grinnellian niche and secondarily by biotic factors (e.g. vertical and horizontal segregation within habitats) that describe the Eltonian niche. Thus, partitioning across multiple levels of spatial organization is a key mechanism of coexistence in diverse communities.